create_codon_table creates codon table from data frame of aa to codon mapping.
Examples
head(aa2codon)
#> amino_acid codon
#> 1 * TAA
#> 2 * TAG
#> 3 * TGA
#> 4 Ala GCT
#> 5 Ala GCC
#> 6 Ala GCA
create_codon_table(aa2codon = aa2codon)
#> aa_code amino_acid codon subfam
#> <char> <char> <char> <char>
#> 1: * * TAA *_TA
#> 2: * * TAG *_TA
#> 3: * * TGA *_TG
#> 4: A Ala GCT Ala_GC
#> 5: A Ala GCC Ala_GC
#> 6: A Ala GCA Ala_GC
#> 7: A Ala GCG Ala_GC
#> 8: R Arg CGT Arg_CG
#> 9: R Arg CGC Arg_CG
#> 10: R Arg CGA Arg_CG
#> 11: R Arg CGG Arg_CG
#> 12: R Arg AGA Arg_AG
#> 13: R Arg AGG Arg_AG
#> 14: N Asn AAT Asn_AA
#> 15: N Asn AAC Asn_AA
#> 16: D Asp GAT Asp_GA
#> 17: D Asp GAC Asp_GA
#> 18: C Cys TGT Cys_TG
#> 19: C Cys TGC Cys_TG
#> 20: Q Gln CAA Gln_CA
#> 21: Q Gln CAG Gln_CA
#> 22: E Glu GAA Glu_GA
#> 23: E Glu GAG Glu_GA
#> 24: G Gly GGT Gly_GG
#> 25: G Gly GGC Gly_GG
#> 26: G Gly GGA Gly_GG
#> 27: G Gly GGG Gly_GG
#> 28: H His CAT His_CA
#> 29: H His CAC His_CA
#> 30: I Ile ATT Ile_AT
#> 31: I Ile ATC Ile_AT
#> 32: I Ile ATA Ile_AT
#> 33: L Leu TTA Leu_TT
#> 34: L Leu TTG Leu_TT
#> 35: L Leu CTT Leu_CT
#> 36: L Leu CTC Leu_CT
#> 37: L Leu CTA Leu_CT
#> 38: L Leu CTG Leu_CT
#> 39: K Lys AAA Lys_AA
#> 40: K Lys AAG Lys_AA
#> 41: M Met ATG Met_AT
#> 42: F Phe TTT Phe_TT
#> 43: F Phe TTC Phe_TT
#> 44: P Pro CCT Pro_CC
#> 45: P Pro CCC Pro_CC
#> 46: P Pro CCA Pro_CC
#> 47: P Pro CCG Pro_CC
#> 48: S Ser TCT Ser_TC
#> 49: S Ser TCC Ser_TC
#> 50: S Ser TCA Ser_TC
#> 51: S Ser TCG Ser_TC
#> 52: S Ser AGT Ser_AG
#> 53: S Ser AGC Ser_AG
#> 54: T Thr ACT Thr_AC
#> 55: T Thr ACC Thr_AC
#> 56: T Thr ACA Thr_AC
#> 57: T Thr ACG Thr_AC
#> 58: W Trp TGG Trp_TG
#> 59: Y Tyr TAT Tyr_TA
#> 60: Y Tyr TAC Tyr_TA
#> 61: V Val GTT Val_GT
#> 62: V Val GTC Val_GT
#> 63: V Val GTA Val_GT
#> 64: V Val GTG Val_GT
#> aa_code amino_acid codon subfam