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GC contents

Source: R/gene_index.R
get_gc.Rd

Calculate GC content of the whole sequences.

Usage

get_gc(cf)

Arguments

cf

matrix of codon frequencies as calculated by `count_codons()`.

Value

a named vector of GC contents.

Examples

# estimate GC content of yeast genes
cf_all <- count_codons(yeast_cds)
gc <- get_gc(cf_all)
head(gc)
#>   YPL071C   YLL050C   YMR172W   YOR185C   YLL032C   YBR225W 
#> 0.3566879 0.3981481 0.4101852 0.4027149 0.3454399 0.3880873 
hist(gc)