Plot codon-anticodon pairing relationship

plot_ca_pairing show possible codon-anticodons pairings

Usage

plot_ca_pairing(codon_table = get_codon_table(), plot = TRUE)

Arguments

codon_table

a table of genetic code derived from get_codon_table or create_codon_table.

plot

whether to plot the pairing relationship

Value

a data.table of codon info and RSCU values

Examples

ctab <- get_codon_table(gcid = '2')
pairing <- plot_ca_pairing(ctab)

head(pairing)
#>      type  codon anticodon
#>    <char> <char>    <char>
#> 1:     WC    TTG       CAA
#> 2:     WC    TTA       TAA
#> 3:     WC    TTC       GAA
#> 4:     IU    TTT       AAA
#> 5:     IC    TTC       AAA
#> 6:     GU    TTT       GAA