Half life of yeast mRNAs — yeast_half

Half life of yeast mRNAs in Saccharomyces_cerevisiae calculated from rRNA-deleted total RNAs by Presnyak et al.

Usage

yeast_half_life

Format

a data.frame with 3888 rows and three columns:

gene_id: gene id
gene_name: gene name
half_life: mRNA half life in minutes

Source

<https://doi.org/10.1016/j.cell.2015.02.029>

References

Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, Olson S, Weinberg D, Baker KE, Graveley BR, et al. 2015. Codon optimality is a major determinant of mRNA stability. Cell 160:1111-1124.

Examples

head(yeast_half_life)
#>   gene_id gene_name half_life
#> 1 YAL001C      TFC3 10.794423
#> 2 YAL003W      EFB1 43.425357
#> 3 YAL007C      ERP2 10.089357
#> 4 YAL008W     FUN14 27.462701
#> 5 YAL009W      SPO7  4.378069
#> 6 YAL010C     MDM10  5.827223