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yeast tRNA sequences

Source: R/data.R
yeast_trna.Rd

Yeast tRNA sequences obtained from gtRNAdb.

Usage

yeast_trna

Format

a RNAStringSet with a length of 275.

Source

<http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa>

References

Chan PP, Lowe TM. 2016. GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes. Nucleic Acids Res 44:D184-189.

Examples

yeast_trna
#> RNAStringSet object of length 275:
#>       width seq                                             names               
#>   [1]    73 GGGCGUGUGGCGUAGUCGGUAG...GGUUCGAUUCCGGACUCGUCCA Saccharomyces_cer...
#>   [2]    73 GGGCGUGUGGCGUAGUCGGUAG...GGUUCGAUUCCGGACUCGUCCA Saccharomyces_cer...
#>   [3]    73 GGGCGUGUGGCGUAGUCGGUAG...GGUUCGAUUCCGGACUCGUCCA Saccharomyces_cer...
#>   [4]    73 GGGCGUGUGGCGUAGUCGGUAG...GGUUCGAUUCCGGACUCGUCCA Saccharomyces_cer...
#>   [5]    73 GGGCGUGUGGCGUAGUCGGUAG...GGUUCGAUUCCGGACUCGUCCA Saccharomyces_cer...
#>   ...   ... ...
#> [271]    72 AGCGCCGUGGCGCAGUGGAAGC...GGAUCGAAACCGAGCGGCGCUA Saccharomyces_cer...
#> [272]    72 AGCGCCGUGGCGCAGUGGAAGC...GGAUCGAAACCGAGCGGCGCUA Saccharomyces_cer...
#> [273]    72 AGCGCCGUGGCGCAGUGGAAGC...GGAUCGAAACCGAGCGGCGCUA Saccharomyces_cer...
#> [274]    72 AGCGCCGUGGCGCAGUGGAAGC...GGAUCGAAACCGAGCGGCGCUA Saccharomyces_cer...
#> [275]    72 AGCGCCGUGGCGCAGUGGAAGC...GGAUCGAAACCGAGCGGCGCUA Saccharomyces_cer...