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yeast tRNA gene copy numbers (GCN)

Source: R/data.R
yeast_trna_gcn.Rd

Yeast tRNA gene copy numbers (GCN) by anticodon obtained from gtRNAdb.

Usage

yeast_trna_gcn

Format

a named vector with a length of 41. Value names are anticodons.

Source

<http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa>

References

Chan PP, Lowe TM. 2016. GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes. Nucleic Acids Res 44:D184-189.

Examples

yeast_trna_gcn
#> 
#> Ala-AGC Ala-TGC Arg-ACG Arg-CCG Arg-CCT Arg-TCT Asn-GTT Asp-GTC Cys-GCA Gln-CTG 
#>      11       5       6       1       1      11      10      16       4       1 
#> Gln-TTG Glu-CTC Glu-TTC Gly-CCC Gly-GCC Gly-TCC His-GTG Ile-AAT Ile-TAT Leu-CAA 
#>       9       2      14       2      16       3       7      13       2      10 
#> Leu-GAG Leu-TAA Leu-TAG Lys-CTT Lys-TTT Met-CAT Phe-GAA Pro-AGG Pro-TGG Ser-AGA 
#>       1       7       3      14       7       5      10       2      10      11 
#> Ser-CGA Ser-GCT Ser-TGA Thr-AGT Thr-CGT Thr-TGT Trp-CCA Tyr-GTA Val-AAC Val-CAC 
#>       1       2       3      11       1       4       6       8      14       2 
#> Val-TAC 
#>       2